| TF name | Position | PWM scan score |
| PhoB | 47-66 | 11.157 |
| MarA | 34-54 | 9.908 |
| GntR | 80-99 | 9.675 |
| Rob | 240-260 | 9.624 |
| NarP | 149-155 | 8.911 |
| GlpR | 128-147 | 8.453 |
| IHF | 303-315 | 7.570 |
| MalT | 196-205 | 7.520 |
| CpxR | 137-151 | 7.239 |
| CRP | 261-282 | 6.698 |
| NorR | 290-306 | 6.653 |
| TyrR | 186-207 | 6.422 |
| RhaS | 49-65 | 6.344 |
| SoxS | 36-53 | 6.236 |
| OxyR | 277-321 | 6.189 |
| ArgP | 44-56 | 6.116 |
| FNR | 303-324 | 6.073 |
| OmpR | 70-89 | 5.864 |
| AraC | 365-382 | 5.762 |
| MelR | 163-180 | 5.713 |
| Ada | 225-252 | 5.530 |
| XylR | 367-384 | 5.337 |
| Nac | 56-70 | 5.235 |