| TF name | Position | PWM scan score |
| MetR | 362-385 | 10.854 |
| AgaR | 18-41 | 10.261 |
| DnaA | 104-112 | 9.874 |
| FruR | 283-300 | 9.687 |
| Nac | 187-201 | 8.384 |
| MelR | 9-26 | 8.208 |
| NarP | 32-38 | 8.154 |
| OmpR | 160-179 | 7.802 |
| SoxS | 93-110 | 7.782 |
| Lrp | 83-94 | 7.424 |
| TyrR | 179-200 | 7.291 |
| GlpR | 158-177 | 7.230 |
| UlaR | 186-205 | 6.829 |
| AraC | 30-47 | 6.615 |
| Rob | 97-117 | 6.540 |
| MetJ | 353-360 | 6.479 |
| RcsB | 246-259 | 6.407 |
| TorR | 251-260 | 6.366 |
| GalS | 119-134 | 6.211 |
| GalR | 119-134 | 6.211 |
| ModE | 9-35 | 6.010 |
| NarL | 223-229 | 5.999 |
| XylR | 95-112 | 5.924 |
| UxuR | 173-190 | 5.555 |
| NorR | 79-95 | 5.494 |
| ArcA | 101-161 | 5.299 |
| H-NS | 171-185 | 5.140 |
| MalT | 19-28 | 5.020 |