| TF name | Position | PWM scan score |
| CueR | 221-239 | 11.872 |
| PurR | 170-185 | 11.702 |
| ArgR | 284-299 | 11.642 |
| AraC | 267-284 | 11.125 |
| H-NS | 85-99 | 10.920 |
| MelR | 264-281 | 10.840 |
| TyrR | 263-284 | 9.952 |
| Fis | 86-106 | 9.831 |
| FNR | 39-60 | 9.805 |
| ArgP | 164-176 | 9.252 |
| MetR | 320-343 | 8.289 |
| Ada | 317-344 | 8.247 |
| IHF | 30-42 | 8.132 |
| DeoR | 280-295 | 7.989 |
| Lrp | 269-280 | 7.867 |
| OmpR | 131-150 | 7.363 |
| NarP | 238-244 | 7.302 |
| Nac | 44-58 | 7.238 |
| PhoB | 28-47 | 7.124 |
| IdnR | 166-181 | 7.032 |
| NarL | 135-141 | 6.534 |
| ArcA | 250-310 | 6.235 |
| Rob | 25-45 | 6.212 |
| Mlc | 272-294 | 5.908 |
| MarA | 251-271 | 5.861 |
| RcsB | 284-297 | 5.739 |
| LacI | 252-272 | 5.635 |
| FadR | 188-204 | 5.535 |
| MalT | 334-343 | 5.445 |
| GntR | 56-75 | 5.056 |
| CytR | 249-288 | 5.052 |