| TF name | Position | PWM scan score |
| ArgR | 217-232 | 11.828 |
| MarA | 209-229 | 11.636 |
| AgaR | 342-365 | 10.655 |
| TyrR | 111-132 | 10.345 |
| CpxR | 239-253 | 9.650 |
| ModE | 104-130 | 9.120 |
| NarL | 147-153 | 8.755 |
| Fis | 138-158 | 8.597 |
| DnaA | 9-17 | 8.389 |
| TorR | 334-343 | 8.378 |
| NtrC | 107-123 | 8.299 |
| H-NS | 208-222 | 8.289 |
| IHF | 349-361 | 8.221 |
| Ada | 221-248 | 8.216 |
| UlaR | 242-261 | 7.672 |
| XylR | 131-148 | 7.652 |
| LacI | 5-25 | 7.618 |
| MelR | 133-150 | 7.426 |
| FNR | 335-356 | 7.267 |
| NarP | 250-256 | 7.057 |
| Mlc | 285-307 | 6.897 |
| PhoP | 287-303 | 6.780 |
| IdnR | 275-290 | 6.775 |
| FhlA | 117-156 | 6.764 |
| MalT | 365-374 | 6.725 |
| FadR | 54-70 | 6.099 |
| Nac | 138-152 | 6.019 |
| Lrp | 96-107 | 5.904 |
| GcvA | 323-351 | 5.712 |
| DeoR | 141-156 | 5.704 |
| MetR | 102-125 | 5.668 |
| Rob | 221-241 | 5.531 |
| OmpR | 326-345 | 5.211 |
| PspF | 289-305 | 5.032 |