| TF name | Position | PWM scan score |
| IHF | 75-87 | 11.743 |
| Rob | 67-87 | 11.633 |
| SoxS | 342-359 | 10.572 |
| XylR | 230-247 | 10.309 |
| ArgR | 269-284 | 9.687 |
| TorR | 380-389 | 9.683 |
| NtrC | 267-283 | 8.961 |
| FadR | 326-342 | 8.736 |
| AraC | 296-313 | 7.852 |
| MetR | 361-384 | 7.573 |
| Ada | 215-242 | 7.396 |
| PurR | 343-358 | 6.993 |
| PhoP | 187-203 | 6.918 |
| RhaS | 213-229 | 6.749 |
| Fur | 24-38 | 6.662 |
| MarA | 16-36 | 6.469 |
| NarL | 350-356 | 6.268 |
| MalT | 174-183 | 6.189 |
| Fis | 234-254 | 6.064 |
| Lrp | 81-92 | 5.890 |
| H-NS | 66-80 | 5.873 |
| UlaR | 379-398 | 5.834 |
| CpxR | 128-142 | 5.790 |
| GadE | 232-251 | 5.631 |
| UxuR | 80-97 | 5.630 |
| DnaA | 239-247 | 5.524 |
| LacI | 271-291 | 5.500 |
| FruR | 146-163 | 5.496 |
| NorR | 85-101 | 5.177 |