| TF name | Position | PWM scan score |
| PhoB | 25-44 | 11.295 |
| NorR | 6-22 | 10.921 |
| GadE | 28-47 | 10.705 |
| MarA | 305-325 | 10.113 |
| IHF | 120-132 | 9.501 |
| GcvA | 317-345 | 9.041 |
| UlaR | 331-350 | 8.803 |
| CysB | 8-49 | 7.906 |
| XylR | 18-35 | 7.559 |
| Nac | 342-356 | 7.496 |
| AgaR | 117-140 | 7.377 |
| NtrC | 32-48 | 7.064 |
| UxuR | 331-348 | 7.015 |
| Ada | 97-124 | 6.729 |
| CpxR | 199-213 | 6.644 |
| Fis | 324-344 | 6.592 |
| PhoP | 34-50 | 6.536 |
| TyrR | 3-24 | 6.055 |
| DeoR | 14-29 | 5.972 |
| NagC | 25-47 | 5.965 |
| Lrp | 21-32 | 5.883 |
| SoxS | 321-338 | 5.757 |
| NarL | 195-201 | 5.740 |
| ArgP | 330-342 | 5.599 |
| NarP | 358-364 | 5.581 |
| OxyR | 309-353 | 5.417 |
| PurR | 120-135 | 5.414 |
| H-NS | 343-357 | 5.335 |
| CRP | 118-139 | 5.128 |
| MetJ | 214-221 | 5.101 |