| TF name | Position | PWM scan score |
| OxyR | 111-155 | 10.871 |
| H-NS | 145-159 | 10.263 |
| Nac | 184-198 | 9.777 |
| FNR | 310-331 | 9.702 |
| FadR | 195-211 | 9.662 |
| NagC | 218-240 | 9.530 |
| Fis | 122-142 | 9.450 |
| PhoB | 88-107 | 8.623 |
| IHF | 92-104 | 8.460 |
| RcsB | 284-297 | 8.257 |
| TyrR | 229-250 | 7.501 |
| NarL | 277-283 | 7.336 |
| MetJ | 189-196 | 7.190 |
| DnaA | 134-142 | 6.990 |
| OmpR | 286-305 | 6.620 |
| GcvA | 129-157 | 6.488 |
| Mlc | 308-330 | 6.412 |
| ModE | 293-319 | 6.347 |
| MalT | 240-249 | 6.205 |
| ArcA | 271-331 | 6.203 |
| Lrp | 101-112 | 6.181 |
| Rob | 132-152 | 6.134 |
| MetR | 190-213 | 5.971 |
| GntR | 307-326 | 5.920 |
| MarA | 300-320 | 5.495 |
| ArgR | 322-337 | 5.393 |
| CueR | 90-108 | 5.358 |
| ArgP | 308-320 | 5.211 |
| DeoR | 134-149 | 5.208 |
| Fur | 299-313 | 5.197 |