| TF name | Position | PWM scan score |
| CueR | 81-99 | 12.145 |
| NagC | 343-365 | 10.341 |
| XylR | 285-302 | 9.658 |
| FNR | 361-382 | 9.035 |
| Nac | 15-29 | 8.921 |
| OmpR | 348-367 | 8.760 |
| CRP | 358-379 | 8.647 |
| MalT | 299-308 | 8.010 |
| Ada | 273-300 | 7.838 |
| MetJ | 136-143 | 7.612 |
| Mlc | 341-363 | 7.295 |
| Fis | 188-208 | 7.081 |
| UlaR | 1-20 | 6.976 |
| NarP | 317-323 | 6.904 |
| TorR | 193-202 | 6.838 |
| Lrp | 13-24 | 6.687 |
| DnaA | 154-162 | 6.605 |
| NarL | 308-314 | 6.267 |
| H-NS | 87-101 | 6.265 |
| LacI | 97-117 | 6.235 |
| FruR | 93-110 | 6.194 |
| AgaR | 179-202 | 6.179 |
| DeoR | 169-184 | 6.139 |
| GntR | 29-48 | 6.004 |
| GcvA | 171-199 | 5.817 |
| ArgP | 369-381 | 5.581 |
| RcsB | 30-43 | 5.304 |
| FhlA | 156-195 | 5.296 |
| RhaS | 224-240 | 5.227 |
| IHF | 53-65 | 5.143 |
| GalS | 306-321 | 5.122 |
| GalR | 306-321 | 5.122 |