| TF name | Position | PWM scan score |
| CysB | 183-224 | 13.509 |
| NagC | 106-128 | 10.341 |
| ArgP | 376-388 | 9.725 |
| XylR | 48-65 | 9.658 |
| ModE | 212-238 | 9.596 |
| NtrC | 321-337 | 9.206 |
| NorR | 206-222 | 9.138 |
| FNR | 124-145 | 9.035 |
| Fis | 370-390 | 8.793 |
| OmpR | 111-130 | 8.760 |
| CRP | 121-142 | 8.647 |
| PhoB | 260-279 | 8.364 |
| LacI | 191-211 | 8.167 |
| TorR | 222-231 | 8.166 |
| MarA | 191-211 | 8.016 |
| MalT | 62-71 | 8.010 |
| Ada | 36-63 | 7.838 |
| Rob | 369-389 | 7.703 |
| SoxS | 372-389 | 7.411 |
| Lrp | 349-360 | 7.384 |
| MetJ | 213-220 | 7.363 |
| Mlc | 104-126 | 7.295 |
| IHF | 356-368 | 7.133 |
| NarP | 80-86 | 6.904 |
| GntR | 182-201 | 6.789 |
| TyrR | 203-224 | 6.686 |
| NarL | 71-77 | 6.267 |
| DnaA | 57-65 | 6.246 |
| CueR | 277-295 | 6.127 |
| Nac | 111-125 | 5.879 |
| DeoR | 215-230 | 5.803 |
| H-NS | 196-210 | 5.647 |
| GalR | 69-84 | 5.122 |
| GalS | 69-84 | 5.122 |
| ArcA | 186-246 | 5.090 |
| RcsB | 118-131 | 5.013 |