| TF name | Position | PWM scan score |
| ArgP | 372-384 | 12.629 |
| Rob | 371-391 | 12.273 |
| AgaR | 354-377 | 10.943 |
| RhaS | 127-143 | 10.611 |
| MalT | 264-273 | 9.542 |
| NorR | 41-57 | 9.366 |
| Lrp | 241-252 | 8.792 |
| FadR | 341-357 | 8.363 |
| H-NS | 373-387 | 8.291 |
| CueR | 58-76 | 8.244 |
| FNR | 368-389 | 8.200 |
| MelR | 117-134 | 7.874 |
| IdnR | 220-235 | 7.706 |
| MarA | 155-175 | 7.655 |
| LacI | 128-148 | 7.555 |
| Fis | 234-254 | 7.401 |
| SoxS | 318-335 | 7.257 |
| Nac | 366-380 | 7.152 |
| NarP | 2-8 | 7.127 |
| TorR | 272-281 | 6.877 |
| FruR | 295-312 | 6.412 |
| GlpR | 119-138 | 6.386 |
| CysB | 129-170 | 6.231 |
| IHF | 351-363 | 6.130 |
| GntR | 290-309 | 5.866 |
| PhoP | 140-156 | 5.862 |
| NtrC | 279-295 | 5.849 |
| XylR | 367-384 | 5.747 |
| MetR | 131-154 | 5.385 |
| DeoR | 62-77 | 5.342 |
| CRP | 227-248 | 5.159 |
| UxuR | 135-152 | 5.066 |