| TF name | Position | PWM scan score |
| XylR | 335-352 | 11.986 |
| RcsB | 286-299 | 10.724 |
| UlaR | 282-301 | 9.640 |
| RhaS | 160-176 | 9.421 |
| TorR | 356-365 | 8.121 |
| SoxS | 147-164 | 8.051 |
| GadE | 141-160 | 7.541 |
| MarA | 145-165 | 7.521 |
| MetR | 277-300 | 7.446 |
| MalT | 32-41 | 7.235 |
| MetJ | 256-263 | 7.138 |
| GlpR | 187-206 | 6.758 |
| IHF | 148-160 | 6.720 |
| FNR | 188-209 | 6.650 |
| TyrR | 280-301 | 6.253 |
| FruR | 218-235 | 6.060 |
| PhoP | 379-395 | 5.878 |
| H-NS | 380-394 | 5.832 |
| NarL | 285-291 | 5.740 |
| NorR | 291-307 | 5.722 |
| DeoR | 148-163 | 5.702 |
| Rob | 372-392 | 5.672 |
| PspF | 283-299 | 5.486 |
| OmpR | 185-204 | 5.166 |