| TF name | Position | PWM scan score |
| GadE | 1-20 | 9.825 |
| PhoB | 109-128 | 9.515 |
| PspF | 113-129 | 9.374 |
| MalT | 279-288 | 9.365 |
| H-NS | 250-264 | 8.929 |
| GlpR | 130-149 | 8.241 |
| Nac | 132-146 | 8.170 |
| SoxS | 117-134 | 8.071 |
| NarL | 30-36 | 7.740 |
| MarA | 352-372 | 7.727 |
| TorR | 289-298 | 7.650 |
| LexA | 197-216 | 7.543 |
| Fis | 357-377 | 7.529 |
| Ada | 75-102 | 7.226 |
| MetJ | 252-259 | 7.046 |
| ArgP | 362-374 | 7.044 |
| AraC | 261-278 | 6.865 |
| NarP | 344-350 | 6.654 |
| CueR | 309-327 | 6.635 |
| DnaA | 139-147 | 6.434 |
| FNR | 354-375 | 6.415 |
| IHF | 364-376 | 6.172 |
| ModE | 353-379 | 6.069 |
| CRP | 245-266 | 5.365 |
| CytR | 80-119 | 5.335 |