| TF name | Position | PWM scan score |
| Ada | 98-125 | 14.266 |
| ArgR | 303-318 | 14.190 |
| CpxR | 35-49 | 12.835 |
| H-NS | 307-321 | 12.219 |
| RcsB | 113-126 | 11.384 |
| FhlA | 292-331 | 10.935 |
| GntR | 98-117 | 9.872 |
| PurR | 109-124 | 9.854 |
| TyrR | 314-335 | 9.669 |
| AraC | 301-318 | 9.631 |
| PhoP | 314-330 | 9.519 |
| UxuR | 171-188 | 9.211 |
| DnaA | 35-43 | 8.717 |
| PhoB | 328-347 | 8.316 |
| GlpR | 135-154 | 7.775 |
| Lrp | 337-348 | 7.752 |
| Mlc | 115-137 | 7.733 |
| Rob | 77-97 | 7.509 |
| AgaR | 341-364 | 7.449 |
| ArgP | 78-90 | 7.350 |
| SoxS | 128-145 | 7.205 |
| ArcA | 311-371 | 7.119 |
| NtrC | 179-195 | 6.569 |
| OmpR | 79-98 | 6.458 |
| NarL | 266-272 | 6.428 |
| RhaS | 26-42 | 6.395 |
| IHF | 46-58 | 6.295 |
| IdnR | 302-317 | 6.176 |
| NarP | 346-352 | 6.076 |
| NagC | 325-347 | 5.743 |
| FNR | 70-91 | 5.612 |
| Fis | 23-43 | 5.554 |
| NorR | 311-327 | 5.391 |
| Fur | 136-150 | 5.248 |
| FadR | 355-371 | 5.165 |
| CysB | 304-345 | 5.110 |
| MalT | 123-132 | 5.108 |
| CueR | 122-140 | 5.026 |