| TF name | Position | PWM scan score |
| ArcA | 11-71 | 15.660 |
| Mlc | 368-390 | 14.103 |
| CysB | 293-334 | 13.975 |
| TyrR | 361-382 | 13.726 |
| H-NS | 37-51 | 13.579 |
| GadE | 37-56 | 12.155 |
| PurR | 6-21 | 10.390 |
| FNR | 305-326 | 9.312 |
| ArgP | 321-333 | 9.259 |
| CytR | 274-313 | 9.006 |
| Nac | 35-49 | 8.981 |
| Rob | 317-337 | 8.889 |
| DeoR | 334-349 | 8.298 |
| GcvA | 218-246 | 8.243 |
| RcsB | 75-88 | 8.193 |
| SoxS | 28-45 | 8.102 |
| ArgR | 218-233 | 8.047 |
| NarL | 273-279 | 7.713 |
| TorR | 310-319 | 7.526 |
| Lrp | 279-290 | 7.517 |
| IHF | 222-234 | 7.379 |
| DnaA | 373-381 | 7.297 |
| PhoP | 134-150 | 7.239 |
| GlpR | 215-234 | 7.043 |
| MarA | 59-79 | 7.029 |
| Fis | 15-35 | 6.738 |
| PhoB | 179-198 | 6.635 |
| Fur | 269-283 | 6.552 |
| NarP | 285-291 | 6.524 |
| XylR | 271-288 | 6.421 |
| OmpR | 306-325 | 6.229 |
| OxyR | 6-50 | 6.146 |
| AgaR | 25-48 | 6.034 |
| CRP | 302-323 | 5.562 |
| ModE | 26-52 | 5.528 |
| MetR | 333-356 | 5.526 |
| MalT | 347-356 | 5.513 |
| NorR | 274-290 | 5.268 |
| UlaR | 271-290 | 5.225 |
| PspF | 381-397 | 5.032 |
| IdnR | 356-371 | 5.025 |