| TF name | Position | PWM scan score |
| Mlc | 44-66 | 13.814 |
| ArcA | 145-205 | 12.800 |
| FadR | 58-74 | 12.007 |
| IHF | 38-50 | 10.486 |
| Lrp | 161-172 | 9.608 |
| DeoR | 25-40 | 9.582 |
| FNR | 134-155 | 8.980 |
| MarA | 143-163 | 8.638 |
| GadE | 110-129 | 8.403 |
| Rob | 106-126 | 8.061 |
| CRP | 109-130 | 8.061 |
| MetR | 193-216 | 7.925 |
| MetJ | 259-266 | 7.893 |
| NarL | 143-149 | 7.577 |
| Fur | 152-166 | 7.567 |
| AraC | 201-218 | 7.545 |
| Fis | 134-154 | 7.395 |
| UlaR | 203-222 | 7.230 |
| MalT | 293-302 | 7.138 |
| AgaR | 172-195 | 7.028 |
| TorR | 241-250 | 6.764 |
| NorR | 376-392 | 6.732 |
| RcsB | 107-120 | 6.699 |
| NarP | 158-164 | 6.629 |
| DnaA | 23-31 | 6.355 |
| Nac | 205-219 | 6.329 |
| GntR | 288-307 | 6.197 |
| CpxR | 242-256 | 5.959 |
| GlpR | 353-372 | 5.659 |
| ArgP | 172-184 | 5.599 |
| OmpR | 137-156 | 5.580 |
| Ada | 169-196 | 5.464 |
| NagC | 46-68 | 5.415 |
| SoxS | 31-48 | 5.353 |
| H-NS | 36-50 | 5.275 |
| IdnR | 11-26 | 5.269 |