| TF name | Position | PWM scan score |
| UlaR | 311-330 | 13.788 |
| LacI | 107-127 | 13.573 |
| ArgR | 51-66 | 10.662 |
| TorR | 224-233 | 10.026 |
| NagC | 262-284 | 9.887 |
| MelR | 250-267 | 9.849 |
| OxyR | 342-386 | 9.143 |
| RhaS | 95-111 | 9.092 |
| IHF | 272-284 | 8.936 |
| DeoR | 115-130 | 8.885 |
| CRP | 111-132 | 8.823 |
| CysB | 333-374 | 8.821 |
| XylR | 336-353 | 8.692 |
| Fis | 316-336 | 8.595 |
| ArcA | 126-186 | 7.992 |
| Nac | 155-169 | 7.376 |
| CpxR | 133-147 | 7.266 |
| SoxS | 114-131 | 7.232 |
| GadE | 359-378 | 7.103 |
| UxuR | 382-399 | 7.098 |
| OmpR | 115-134 | 7.035 |
| IdnR | 48-63 | 7.032 |
| DcuR | 333-387 | 7.023 |
| CytR | 238-277 | 6.953 |
| ModE | 114-140 | 6.849 |
| AraC | 55-72 | 6.742 |
| RcsB | 165-178 | 6.713 |
| H-NS | 127-141 | 6.602 |
| CueR | 230-248 | 6.577 |
| NarP | 145-151 | 6.421 |
| Lrp | 319-330 | 6.381 |
| FadR | 70-86 | 6.236 |
| FNR | 278-299 | 6.207 |
| AgaR | 376-399 | 6.167 |
| NarL | 271-277 | 6.105 |
| LexA | 317-336 | 5.984 |
| DnaA | 113-121 | 5.860 |
| MalT | 190-199 | 5.806 |
| NorR | 162-178 | 5.710 |
| NtrC | 269-285 | 5.701 |
| FhlA | 319-358 | 5.277 |
| Rob | 244-264 | 5.091 |
| PspF | 311-327 | 5.032 |