| TF name | Position | PWM scan score |
| FadR | 124-140 | 11.339 |
| UlaR | 312-331 | 11.094 |
| MetR | 114-137 | 10.834 |
| NagC | 299-321 | 10.063 |
| Lrp | 194-205 | 9.061 |
| DnaA | 118-126 | 8.763 |
| Fis | 314-334 | 8.711 |
| FhlA | 317-356 | 8.439 |
| CysB | 282-323 | 8.420 |
| XylR | 190-207 | 8.159 |
| DeoR | 181-196 | 8.096 |
| FruR | 179-196 | 7.968 |
| CRP | 355-376 | 7.780 |
| Nac | 118-132 | 7.647 |
| IHF | 313-325 | 7.583 |
| MelR | 186-203 | 7.576 |
| H-NS | 322-336 | 7.252 |
| GadE | 113-132 | 7.168 |
| ArgP | 250-262 | 7.040 |
| ArgR | 112-127 | 6.833 |
| RhaS | 159-175 | 6.509 |
| Ada | 234-261 | 6.395 |
| GlpR | 324-343 | 6.034 |
| AraC | 147-164 | 6.008 |
| RcsB | 192-205 | 5.844 |
| SoxS | 19-36 | 5.775 |
| NorR | 128-144 | 5.722 |
| MalT | 175-184 | 5.608 |
| OmpR | 113-132 | 5.527 |
| FNR | 182-203 | 5.328 |
| LacI | 44-64 | 5.181 |
| PurR | 149-164 | 5.166 |