| TF name | Position | PWM scan score |
| IdnR | 105-120 | 8.239 |
| CueR | 73-91 | 8.228 |
| PhoB | 100-119 | 8.041 |
| MalT | 121-130 | 7.955 |
| FNR | 227-248 | 7.411 |
| TorR | 378-387 | 7.359 |
| DeoR | 61-76 | 6.833 |
| NarL | 359-365 | 6.678 |
| Fis | 168-188 | 6.528 |
| NarP | 99-105 | 6.421 |
| IHF | 130-142 | 6.179 |
| ArgR | 287-302 | 6.124 |
| GlpR | 64-83 | 6.019 |
| TyrR | 127-148 | 5.820 |
| ArgP | 14-26 | 5.599 |
| Rob | 279-299 | 5.504 |
| MetJ | 214-221 | 5.497 |
| Nac | 280-294 | 5.424 |
| AraC | 314-331 | 5.226 |
| GntR | 116-135 | 5.163 |
| H-NS | 135-149 | 5.100 |