| TF name | Position | PWM scan score |
| Fur | 59-73 | 15.149 |
| PhoB | 28-47 | 11.770 |
| SoxS | 66-83 | 11.732 |
| XylR | 314-331 | 9.216 |
| RcsB | 65-78 | 9.101 |
| GadE | 119-138 | 8.767 |
| H-NS | 80-94 | 8.378 |
| FruR | 330-347 | 8.331 |
| CueR | 211-229 | 8.174 |
| NarP | 89-95 | 8.118 |
| DeoR | 215-230 | 7.977 |
| CRP | 94-115 | 7.874 |
| Nac | 64-78 | 7.501 |
| UlaR | 4-23 | 7.362 |
| ArgP | 81-93 | 7.350 |
| FNR | 290-311 | 7.251 |
| DnaA | 94-102 | 7.204 |
| ArcA | 55-115 | 7.178 |
| GcvA | 283-311 | 7.164 |
| NtrC | 175-191 | 6.977 |
| OmpR | 26-45 | 6.864 |
| IHF | 89-101 | 6.854 |
| PhoP | 151-167 | 6.849 |
| Rob | 164-184 | 6.784 |
| MelR | 59-76 | 6.750 |
| CysB | 1-42 | 6.609 |
| Lrp | 287-298 | 6.497 |
| Fis | 282-302 | 6.467 |
| UxuR | 72-89 | 6.407 |
| NarL | 64-70 | 6.353 |
| NagC | 290-312 | 6.168 |
| GlpR | 160-179 | 6.084 |
| CpxR | 78-92 | 6.064 |
| TorR | 171-180 | 6.049 |
| MarA | 317-337 | 5.909 |
| MalT | 180-189 | 5.605 |
| PurR | 10-25 | 5.535 |
| RhaS | 172-188 | 5.427 |
| AgaR | 1-24 | 5.304 |
| OxyR | 54-98 | 5.221 |
| AraC | 10-27 | 5.166 |