| TF name | Position | PWM scan score |
| MarA | 311-331 | 13.393 |
| PhoB | 368-387 | 11.770 |
| NarP | 229-235 | 9.938 |
| MalT | 133-142 | 9.459 |
| MetR | 324-347 | 9.041 |
| MetJ | 95-102 | 8.120 |
| GalR | 312-327 | 7.882 |
| GalS | 312-327 | 7.882 |
| DeoR | 142-157 | 7.499 |
| UlaR | 344-363 | 7.362 |
| AraC | 329-346 | 7.199 |
| RcsB | 237-250 | 6.951 |
| OmpR | 366-385 | 6.864 |
| XylR | 306-323 | 6.845 |
| CysB | 341-382 | 6.609 |
| IHF | 336-348 | 6.601 |
| NarL | 8-14 | 6.388 |
| Lrp | 220-231 | 6.126 |
| FadR | 9-25 | 6.061 |
| DnaA | 348-356 | 5.881 |
| Fis | 336-356 | 5.787 |
| ArcA | 293-353 | 5.774 |
| NtrC | 41-57 | 5.681 |
| PurR | 350-365 | 5.535 |
| MelR | 256-273 | 5.449 |
| AgaR | 341-364 | 5.304 |