| TF name | Position | PWM scan score |
| IHF | 224-236 | 11.469 |
| Lrp | 327-338 | 11.061 |
| MetR | 129-152 | 10.669 |
| CpxR | 333-347 | 9.620 |
| FNR | 324-345 | 8.920 |
| PhoB | 224-243 | 8.246 |
| UlaR | 134-153 | 7.964 |
| H-NS | 193-207 | 7.531 |
| OmpR | 66-85 | 7.387 |
| Fis | 313-333 | 7.359 |
| NagC | 149-171 | 7.147 |
| CytR | 206-245 | 7.035 |
| MalT | 39-48 | 6.909 |
| NarL | 80-86 | 6.560 |
| AgaR | 136-159 | 6.132 |
| ArgR | 380-395 | 6.055 |
| FadR | 121-137 | 5.857 |
| GntR | 190-209 | 5.845 |
| GlpR | 279-298 | 5.782 |
| Rob | 373-393 | 5.509 |
| DeoR | 289-304 | 5.277 |
| RhaS | 331-347 | 5.155 |