| TF name | Position | PWM scan score |
| ArcA | 210-270 | 12.298 |
| FNR | 208-229 | 11.908 |
| MetR | 69-92 | 11.540 |
| NagC | 216-238 | 10.174 |
| GntR | 63-82 | 10.021 |
| IHF | 222-234 | 9.946 |
| Fur | 207-221 | 9.933 |
| PhoP | 227-243 | 9.561 |
| IdnR | 324-339 | 9.083 |
| Lrp | 225-236 | 8.880 |
| H-NS | 228-242 | 8.868 |
| PhoB | 213-232 | 8.707 |
| MetJ | 148-155 | 8.626 |
| NorR | 356-372 | 8.526 |
| GlpR | 31-50 | 8.361 |
| Nac | 81-95 | 8.346 |
| TyrR | 220-241 | 8.237 |
| GadE | 87-106 | 8.011 |
| UlaR | 39-58 | 8.003 |
| CpxR | 326-340 | 7.709 |
| TrpR | 177-194 | 7.658 |
| NarP | 234-240 | 7.585 |
| Fis | 255-275 | 7.530 |
| DnaA | 232-240 | 7.209 |
| AraC | 222-239 | 7.149 |
| NarL | 209-215 | 7.107 |
| Rob | 246-266 | 7.046 |
| MalT | 382-391 | 6.829 |
| UxuR | 226-243 | 6.573 |
| SoxS | 357-374 | 6.350 |
| CytR | 68-107 | 6.339 |
| ArgP | 333-345 | 6.207 |
| TorR | 320-329 | 6.049 |
| CRP | 222-243 | 5.692 |
| GcvA | 329-357 | 5.661 |
| OmpR | 28-47 | 5.333 |
| FadR | 316-332 | 5.306 |
| Ada | 314-341 | 5.246 |
| ModE | 294-320 | 5.139 |