| TF name | Position | PWM scan score |
| ModE | 299-325 | 14.348 |
| MarA | 61-81 | 13.162 |
| GntR | 355-374 | 12.727 |
| Fur | 364-378 | 12.637 |
| DnaA | 362-370 | 11.511 |
| Nac | 362-376 | 10.379 |
| TyrR | 213-234 | 10.258 |
| AraC | 103-120 | 10.130 |
| IHF | 205-217 | 9.870 |
| GadE | 310-329 | 9.762 |
| MelR | 350-367 | 9.690 |
| OxyR | 341-385 | 9.368 |
| PhoB | 378-397 | 9.321 |
| FNR | 364-385 | 9.176 |
| CpxR | 215-229 | 8.594 |
| OmpR | 271-290 | 8.419 |
| Lrp | 199-210 | 8.257 |
| H-NS | 114-128 | 8.194 |
| Ada | 202-229 | 8.178 |
| PhoP | 69-85 | 8.154 |
| NarL | 159-165 | 8.006 |
| NtrC | 248-264 | 7.642 |
| UxuR | 370-387 | 7.552 |
| ArgR | 366-381 | 7.534 |
| ArgP | 369-381 | 7.521 |
| UlaR | 95-114 | 7.302 |
| RcsB | 215-228 | 7.264 |
| MetJ | 103-110 | 7.073 |
| TorR | 325-334 | 7.050 |
| ArcA | 264-324 | 6.789 |
| GlpR | 273-292 | 6.608 |
| Rob | 298-318 | 6.527 |
| PspF | 114-130 | 6.425 |
| NarP | 377-383 | 6.334 |
| Fis | 270-290 | 6.318 |
| NagC | 360-382 | 5.948 |
| SoxS | 293-310 | 5.899 |
| XylR | 366-383 | 5.736 |
| IdnR | 383-398 | 5.647 |
| FruR | 374-391 | 5.497 |
| NorR | 261-277 | 5.482 |
| GcvA | 212-240 | 5.449 |
| CytR | 356-395 | 5.401 |
| LacI | 219-239 | 5.351 |