| TF name | Position | PWM scan score |
| RcsB | 386-399 | 13.428 |
| PurR | 149-164 | 11.403 |
| GlpR | 119-138 | 9.477 |
| CRP | 228-249 | 8.852 |
| MetJ | 111-118 | 8.612 |
| DeoR | 240-255 | 8.524 |
| XylR | 233-250 | 8.380 |
| RhaS | 172-188 | 8.140 |
| OmpR | 92-111 | 7.105 |
| Fis | 82-102 | 7.087 |
| MarA | 105-125 | 6.989 |
| GalS | 149-164 | 6.877 |
| GalR | 149-164 | 6.877 |
| UxuR | 48-65 | 6.837 |
| NarL | 199-205 | 6.332 |
| IHF | 105-117 | 6.234 |
| FruR | 202-219 | 6.212 |
| Nac | 2-16 | 6.125 |
| DnaA | 170-178 | 6.075 |
| FadR | 240-256 | 6.034 |
| H-NS | 141-155 | 5.853 |
| PhoB | 105-124 | 5.853 |
| NorR | 107-123 | 5.789 |
| MalT | 214-223 | 5.785 |
| UlaR | 243-262 | 5.433 |
| GntR | 3-22 | 5.195 |
| AraC | 220-237 | 5.181 |
| ArgP | 384-396 | 5.148 |
| MelR | 380-397 | 5.021 |