| TF name | Position | PWM scan score |
| XylR | 240-257 | 11.299 |
| MelR | 200-217 | 9.866 |
| IHF | 165-177 | 9.719 |
| ArgR | 360-375 | 9.437 |
| Ada | 279-306 | 9.240 |
| SoxS | 264-281 | 9.188 |
| DnaA | 356-364 | 8.889 |
| H-NS | 357-371 | 8.676 |
| NarL | 197-203 | 8.619 |
| CRP | 96-117 | 8.437 |
| CpxR | 39-53 | 8.220 |
| FadR | 206-222 | 7.891 |
| NorR | 92-108 | 7.584 |
| FNR | 99-120 | 7.495 |
| TorR | 353-362 | 7.301 |
| Nac | 366-380 | 7.219 |
| OmpR | 243-262 | 7.144 |
| ArgP | 211-223 | 7.035 |
| Fur | 99-113 | 6.919 |
| LacI | 211-231 | 6.865 |
| Fis | 307-327 | 6.820 |
| UlaR | 354-373 | 6.392 |
| GcvA | 198-226 | 6.295 |
| MarA | 262-282 | 6.223 |
| MalT | 4-13 | 6.189 |
| GadE | 314-333 | 6.095 |
| TyrR | 93-114 | 5.981 |
| RhaS | 235-251 | 5.965 |
| AraC | 271-288 | 5.964 |
| PurR | 29-44 | 5.891 |
| NarP | 383-389 | 5.835 |
| Rob | 360-380 | 5.794 |
| MetJ | 111-118 | 5.618 |
| NagC | 250-272 | 5.448 |
| Lrp | 316-327 | 5.421 |
| DeoR | 356-371 | 5.261 |