| TF name | Position | PWM scan score |
| GadE | 149-168 | 11.580 |
| DeoR | 220-235 | 11.484 |
| OmpR | 211-230 | 11.377 |
| GntR | 112-131 | 11.185 |
| TyrR | 223-244 | 10.902 |
| PspF | 250-266 | 9.453 |
| H-NS | 239-253 | 9.424 |
| MetJ | 323-330 | 9.336 |
| PhoB | 231-250 | 9.228 |
| CysB | 226-267 | 8.862 |
| NarL | 96-102 | 8.619 |
| IHF | 225-237 | 8.612 |
| NagC | 369-391 | 8.587 |
| Fis | 118-138 | 8.092 |
| FruR | 163-180 | 8.090 |
| FNR | 284-305 | 7.960 |
| ArcA | 212-272 | 7.562 |
| TorR | 366-375 | 7.521 |
| CpxR | 296-310 | 7.437 |
| LacI | 240-260 | 7.398 |
| AraC | 121-138 | 7.332 |
| MalT | 25-34 | 7.311 |
| Rob | 370-390 | 7.279 |
| SoxS | 81-98 | 7.221 |
| PhoP | 295-311 | 7.207 |
| CRP | 281-302 | 7.162 |
| XylR | 360-377 | 6.932 |
| Lrp | 280-291 | 6.917 |
| ArgR | 232-247 | 6.689 |
| MarA | 224-244 | 6.603 |
| AgaR | 223-246 | 6.401 |
| NtrC | 249-265 | 6.372 |
| PurR | 302-317 | 6.241 |
| NarP | 308-314 | 6.076 |
| Nac | 319-333 | 6.051 |
| ArgP | 124-136 | 6.045 |
| UlaR | 225-244 | 6.017 |
| DnaA | 321-329 | 5.710 |
| MetR | 89-112 | 5.568 |
| GcvA | 222-250 | 5.554 |
| NorR | 122-138 | 5.312 |
| RcsB | 107-120 | 5.069 |
| Fur | 88-102 | 5.061 |