| TF name | Position | PWM scan score |
| OmpR | 250-269 | 11.980 |
| MelR | 226-243 | 11.692 |
| GntR | 292-311 | 11.366 |
| RcsB | 307-320 | 11.204 |
| ArcA | 68-128 | 10.942 |
| MetR | 96-119 | 10.522 |
| SoxS | 367-384 | 9.439 |
| MarA | 213-233 | 8.615 |
| NarP | 124-130 | 8.154 |
| FNR | 92-113 | 8.092 |
| DnaA | 148-156 | 8.003 |
| IHF | 376-388 | 7.778 |
| GadE | 369-388 | 7.677 |
| Ada | 292-319 | 7.471 |
| FruR | 48-65 | 7.387 |
| Lrp | 263-274 | 7.302 |
| UlaR | 304-323 | 7.269 |
| GlpR | 265-284 | 7.055 |
| NagC | 95-117 | 6.920 |
| AgaR | 311-334 | 6.884 |
| CytR | 71-110 | 6.866 |
| NarL | 129-135 | 6.854 |
| ArgR | 221-236 | 6.752 |
| CpxR | 331-345 | 6.606 |
| Rob | 368-388 | 6.537 |
| DeoR | 104-119 | 6.466 |
| TyrR | 225-246 | 6.462 |
| Fis | 86-106 | 6.441 |
| AraC | 307-324 | 6.417 |
| CRP | 257-278 | 5.904 |
| H-NS | 307-321 | 5.883 |
| MetJ | 98-105 | 5.720 |
| Nac | 284-298 | 5.649 |
| PhoB | 107-126 | 5.533 |
| XylR | 225-242 | 5.361 |
| IdnR | 74-89 | 5.348 |
| CysB | 67-108 | 5.088 |
| PhoP | 3-19 | 5.045 |