| TF name | Position | PWM scan score |
| PhoB | 317-336 | 11.779 |
| DnaA | 166-174 | 11.511 |
| GlpR | 226-245 | 10.985 |
| DeoR | 252-267 | 10.882 |
| TyrR | 123-144 | 10.340 |
| MelR | 240-257 | 9.775 |
| Nac | 346-360 | 9.261 |
| IHF | 292-304 | 9.061 |
| ArcA | 263-323 | 9.018 |
| H-NS | 117-131 | 8.743 |
| SoxS | 255-272 | 8.691 |
| ModE | 130-156 | 8.474 |
| IdnR | 268-283 | 8.463 |
| Fis | 51-71 | 8.369 |
| ArgP | 353-365 | 8.275 |
| PhoP | 251-267 | 8.025 |
| FNR | 302-323 | 7.838 |
| UxuR | 161-178 | 7.747 |
| FhlA | 142-181 | 7.683 |
| PspF | 265-281 | 7.402 |
| NarL | 253-259 | 7.309 |
| PurR | 208-223 | 7.161 |
| NagC | 330-352 | 6.845 |
| LexA | 299-318 | 6.594 |
| Lrp | 187-198 | 6.429 |
| GadE | 285-304 | 6.314 |
| CytR | 267-306 | 6.312 |
| RhaS | 69-85 | 6.294 |
| GalR | 90-105 | 6.241 |
| GalS | 90-105 | 6.241 |
| CRP | 360-381 | 6.207 |
| OmpR | 325-344 | 5.888 |
| NorR | 259-275 | 5.880 |
| FadR | 57-73 | 5.851 |
| TorR | 330-339 | 5.837 |
| MarA | 33-53 | 5.798 |
| Rob | 140-160 | 5.795 |
| XylR | 55-72 | 5.794 |
| FruR | 157-174 | 5.771 |
| NarP | 62-68 | 5.765 |
| Mlc | 249-271 | 5.494 |
| RcsB | 325-338 | 5.438 |
| CpxR | 182-196 | 5.240 |
| UlaR | 133-152 | 5.111 |