| TF name | Position | PWM scan score |
| FNR | 61-82 | 13.277 |
| NagC | 271-293 | 10.727 |
| MetR | 359-382 | 10.675 |
| Mlc | 267-289 | 10.562 |
| DnaA | 66-74 | 10.552 |
| ModE | 136-162 | 10.521 |
| CRP | 284-305 | 10.440 |
| UlaR | 200-219 | 9.800 |
| AraC | 68-85 | 9.557 |
| LexA | 294-313 | 9.453 |
| Ada | 325-352 | 9.101 |
| Fis | 293-313 | 8.949 |
| DeoR | 294-309 | 8.886 |
| TyrR | 367-388 | 8.678 |
| IHF | 338-350 | 8.578 |
| Lrp | 245-256 | 8.530 |
| ArcA | 316-376 | 8.395 |
| NarL | 76-82 | 8.326 |
| CpxR | 272-286 | 8.025 |
| Nac | 189-203 | 7.882 |
| XylR | 57-74 | 7.782 |
| PhoB | 307-326 | 7.764 |
| MetJ | 210-217 | 7.644 |
| OmpR | 342-361 | 7.387 |
| MelR | 282-299 | 7.353 |
| ArgR | 70-85 | 7.165 |
| GlpR | 373-392 | 6.982 |
| CysB | 341-382 | 6.891 |
| MalT | 233-242 | 6.792 |
| RcsB | 356-369 | 6.768 |
| GcvA | 368-396 | 6.705 |
| NorR | 243-259 | 6.653 |
| NtrC | 368-384 | 6.393 |
| Rob | 139-159 | 6.339 |
| H-NS | 316-330 | 6.238 |
| PhoP | 130-146 | 6.062 |
| TorR | 128-137 | 5.759 |
| ArgP | 266-278 | 5.659 |
| NarP | 254-260 | 5.581 |
| CytR | 353-392 | 5.363 |