| TF name | Position | PWM scan score |
| CueR | 110-128 | 12.278 |
| MarA | 281-301 | 12.228 |
| OmpR | 167-186 | 12.177 |
| MalT | 93-102 | 11.329 |
| GadE | 179-198 | 11.129 |
| GntR | 189-208 | 10.373 |
| ArgP | 179-191 | 10.338 |
| Fis | 373-393 | 9.434 |
| H-NS | 381-395 | 9.098 |
| FadR | 366-382 | 7.543 |
| TorR | 172-181 | 7.359 |
| ModE | 368-394 | 7.049 |
| SoxS | 120-137 | 7.038 |
| LacI | 213-233 | 6.612 |
| NarP | 38-44 | 6.598 |
| CpxR | 186-200 | 6.255 |
| RhaS | 85-101 | 6.220 |
| GlpR | 176-195 | 6.009 |
| AgaR | 167-190 | 5.751 |
| PhoB | 210-229 | 5.676 |
| GalS | 121-136 | 5.335 |
| GalR | 121-136 | 5.335 |
| IdnR | 95-110 | 5.257 |
| NorR | 321-337 | 5.233 |
| PhoP | 174-190 | 5.225 |