| TF name | Position | PWM scan score |
| ArgR | 95-110 | 12.769 |
| RhaS | 54-70 | 9.204 |
| MalT | 138-147 | 9.175 |
| PhoB | 182-201 | 9.160 |
| GntR | 360-379 | 8.977 |
| CytR | 38-77 | 8.968 |
| IHF | 99-111 | 8.318 |
| TorR | 102-111 | 8.245 |
| DnaA | 101-109 | 8.058 |
| Fis | 89-109 | 7.352 |
| NarP | 206-212 | 6.904 |
| LexA | 261-280 | 6.894 |
| MetJ | 192-199 | 6.521 |
| GlpR | 1-20 | 6.489 |
| FNR | 89-110 | 5.841 |
| AraC | 28-45 | 5.807 |
| CueR | 136-154 | 5.547 |
| Nac | 88-102 | 5.511 |
| FruR | 342-359 | 5.411 |
| CysB | 33-74 | 5.324 |
| GadE | 101-120 | 5.295 |
| DeoR | 147-162 | 5.187 |
| LacI | 362-382 | 5.003 |