| TF name | Position | PWM scan score |
| FNR | 362-383 | 11.520 |
| LacI | 231-251 | 9.957 |
| MarA | 284-304 | 9.194 |
| RhaS | 112-128 | 9.115 |
| IdnR | 325-340 | 9.004 |
| DeoR | 173-188 | 8.530 |
| SoxS | 370-387 | 8.470 |
| GadE | 379-398 | 8.312 |
| NarL | 10-16 | 8.169 |
| GlpR | 71-90 | 8.018 |
| MetJ | 345-352 | 7.980 |
| TrpR | 262-279 | 7.720 |
| PurR | 123-138 | 7.704 |
| H-NS | 37-51 | 7.685 |
| PhoB | 371-390 | 7.681 |
| OmpR | 359-378 | 7.287 |
| FadR | 247-263 | 7.276 |
| CRP | 361-382 | 7.144 |
| FruR | 265-282 | 7.099 |
| PspF | 68-84 | 6.338 |
| Fis | 160-180 | 6.315 |
| Rob | 155-175 | 6.253 |
| PhoP | 363-379 | 6.165 |
| GalR | 314-329 | 6.148 |
| GalS | 314-329 | 6.148 |
| ArgR | 180-195 | 5.992 |
| DnaA | 56-64 | 5.954 |
| ArcA | 335-395 | 5.883 |
| XylR | 5-22 | 5.861 |
| ArgP | 360-372 | 5.690 |
| IHF | 354-366 | 5.522 |
| Lrp | 135-146 | 5.306 |
| UxuR | 362-379 | 5.190 |
| MalT | 215-224 | 5.107 |