| TF name | Position | PWM scan score |
| GlpR | 330-349 | 11.715 |
| ArgR | 166-181 | 9.642 |
| TorR | 84-93 | 8.583 |
| IHF | 88-100 | 8.543 |
| MarA | 271-291 | 8.325 |
| OmpR | 170-189 | 7.284 |
| LacI | 12-32 | 6.889 |
| NarL | 391-397 | 6.880 |
| SoxS | 273-290 | 6.803 |
| Fis | 74-94 | 6.802 |
| DnaA | 83-91 | 6.709 |
| H-NS | 79-93 | 6.597 |
| ArgP | 169-181 | 6.424 |
| MelR | 378-395 | 6.031 |
| IdnR | 135-150 | 6.010 |
| PhoP | 12-28 | 5.930 |
| DeoR | 25-40 | 5.893 |
| Lrp | 337-348 | 5.797 |
| AraC | 104-121 | 5.385 |
| RcsB | 384-397 | 5.010 |