| TF name | Position | PWM scan score |
| NagC | 352-374 | 15.204 |
| AraC | 43-60 | 11.118 |
| Lrp | 311-322 | 10.175 |
| H-NS | 25-39 | 9.714 |
| Mlc | 350-372 | 9.615 |
| RcsB | 309-322 | 9.528 |
| DnaA | 329-337 | 9.363 |
| MelR | 303-320 | 9.314 |
| IHF | 123-135 | 8.948 |
| Rob | 70-90 | 8.662 |
| GntR | 349-368 | 8.447 |
| ArgR | 264-279 | 7.921 |
| FNR | 117-138 | 7.645 |
| ArcA | 301-361 | 7.587 |
| PhoB | 304-323 | 7.483 |
| ArgP | 313-325 | 7.202 |
| NarP | 369-375 | 7.057 |
| MetJ | 188-195 | 6.995 |
| CysB | 315-356 | 6.952 |
| PurR | 145-160 | 6.895 |
| TorR | 311-320 | 6.876 |
| NarL | 48-54 | 6.718 |
| MarA | 218-238 | 6.699 |
| Nac | 310-324 | 6.652 |
| CRP | 197-218 | 6.397 |
| OmpR | 215-234 | 6.268 |
| PhoP | 12-28 | 6.204 |
| DeoR | 173-188 | 6.114 |
| MalT | 86-95 | 6.091 |
| MetR | 4-27 | 5.974 |
| CpxR | 78-92 | 5.693 |
| SoxS | 185-202 | 5.617 |
| XylR | 307-324 | 5.480 |
| Fis | 65-85 | 5.432 |
| GcvA | 45-73 | 5.291 |