| TF name | Position | PWM scan score |
| CRP | 306-327 | 9.223 |
| FNR | 38-59 | 9.104 |
| SoxS | 98-115 | 9.043 |
| MelR | 235-252 | 8.952 |
| NorR | 140-156 | 8.650 |
| IHF | 358-370 | 8.017 |
| PurR | 52-67 | 7.748 |
| GalS | 52-67 | 7.552 |
| GalR | 52-67 | 7.552 |
| Fur | 51-65 | 7.548 |
| AgaR | 281-304 | 7.408 |
| H-NS | 99-113 | 6.963 |
| MalT | 31-40 | 6.741 |
| TorR | 324-333 | 6.610 |
| Lrp | 303-314 | 6.588 |
| Fis | 33-53 | 6.519 |
| Nac | 194-208 | 6.462 |
| MetJ | 306-313 | 6.390 |
| LacI | 335-355 | 6.376 |
| AraC | 52-69 | 6.300 |
| MetR | 350-373 | 6.230 |
| NarP | 8-14 | 6.135 |
| ArgR | 149-164 | 6.124 |
| GadE | 245-264 | 5.742 |
| PhoB | 271-290 | 5.721 |
| RcsB | 381-394 | 5.645 |
| TyrR | 55-76 | 5.022 |
| DnaA | 267-275 | 5.013 |