| TF name | Position | PWM scan score |
| ArcA | 299-359 | 11.632 |
| MetR | 322-345 | 11.445 |
| CysB | 295-336 | 11.079 |
| MetJ | 195-202 | 10.216 |
| OmpR | 321-340 | 9.910 |
| H-NS | 384-398 | 9.449 |
| AgaR | 324-347 | 9.264 |
| NorR | 328-344 | 9.094 |
| TorR | 215-224 | 8.955 |
| NarP | 180-186 | 8.841 |
| FhlA | 64-103 | 8.787 |
| Lrp | 330-341 | 8.749 |
| PhoB | 25-44 | 8.480 |
| IHF | 107-119 | 8.158 |
| UlaR | 125-144 | 8.112 |
| Rob | 319-339 | 8.067 |
| CpxR | 383-397 | 8.047 |
| GcvA | 316-344 | 7.866 |
| PspF | 48-64 | 7.711 |
| GntR | 84-103 | 6.776 |
| Ada | 275-302 | 6.627 |
| CueR | 238-256 | 6.623 |
| RcsB | 331-344 | 6.532 |
| FNR | 294-315 | 6.476 |
| ArgP | 178-190 | 6.411 |
| SoxS | 164-181 | 6.383 |
| RhaS | 361-377 | 6.322 |
| Nac | 296-310 | 6.214 |
| AraC | 128-145 | 6.116 |
| Fis | 309-329 | 6.098 |
| FadR | 166-182 | 5.574 |
| MelR | 168-185 | 5.556 |
| PhoP | 247-263 | 5.449 |
| DnaA | 70-78 | 5.381 |
| IdnR | 7-22 | 5.158 |