| TF name | Position | PWM scan score |
| Fur | 266-280 | 11.287 |
| Nac | 190-204 | 9.680 |
| MelR | 68-85 | 8.827 |
| DnaA | 286-294 | 8.639 |
| RcsB | 216-229 | 7.992 |
| Lrp | 227-238 | 7.832 |
| IdnR | 223-238 | 7.797 |
| MalT | 373-382 | 7.223 |
| DeoR | 288-303 | 7.039 |
| LacI | 81-101 | 6.483 |
| FadR | 307-323 | 6.407 |
| NtrC | 203-219 | 6.226 |
| CueR | 21-39 | 6.181 |
| SoxS | 224-241 | 6.163 |
| CRP | 258-279 | 5.892 |
| FNR | 224-245 | 5.729 |
| TorR | 162-171 | 5.538 |
| AraC | 225-242 | 5.401 |
| MetJ | 11-18 | 5.364 |
| UxuR | 209-226 | 5.190 |
| ArgR | 64-79 | 5.165 |
| H-NS | 346-360 | 5.108 |
| Fis | 348-368 | 5.069 |