| TF name | Position | PWM scan score |
| H-NS | 355-369 | 11.191 |
| RhaS | 113-129 | 9.226 |
| PhoB | 73-92 | 8.855 |
| NarP | 393-399 | 8.841 |
| DeoR | 155-170 | 8.794 |
| PspF | 169-185 | 8.290 |
| SoxS | 319-336 | 8.133 |
| Fis | 319-339 | 7.983 |
| MelR | 365-382 | 7.319 |
| ArgR | 362-377 | 7.286 |
| GntR | 219-238 | 7.066 |
| FruR | 307-324 | 6.734 |
| MalT | 390-399 | 6.710 |
| NagC | 316-338 | 6.623 |
| ArcA | 310-370 | 6.541 |
| ArgP | 385-397 | 6.498 |
| NarL | 295-301 | 6.415 |
| FadR | 265-281 | 6.355 |
| TorR | 382-391 | 5.984 |
| MetJ | 219-226 | 5.904 |
| OmpR | 315-334 | 5.870 |
| Lrp | 275-286 | 5.817 |
| CRP | 68-89 | 5.801 |
| IHF | 290-302 | 5.758 |
| GcvA | 350-378 | 5.592 |
| Fur | 368-382 | 5.421 |
| MarA | 359-379 | 5.289 |
| GlpR | 357-376 | 5.263 |
| AraC | 322-339 | 5.188 |
| PurR | 339-354 | 5.053 |