| TF name | Position | PWM scan score |
| H-NS | 24-38 | 11.191 |
| OmpR | 370-389 | 11.111 |
| RcsB | 346-359 | 10.996 |
| Rob | 280-300 | 10.857 |
| MelR | 182-199 | 10.003 |
| NagC | 233-255 | 9.883 |
| SoxS | 363-380 | 9.751 |
| FruR | 59-76 | 9.428 |
| GadE | 103-122 | 9.064 |
| CRP | 96-117 | 8.907 |
| NarP | 62-68 | 8.841 |
| PurR | 121-136 | 8.839 |
| DnaA | 235-243 | 8.669 |
| MalT | 208-217 | 8.518 |
| Fis | 236-256 | 8.402 |
| ArcA | 77-137 | 8.193 |
| OxyR | 82-126 | 8.087 |
| DcuR | 214-268 | 7.929 |
| IHF | 378-390 | 7.858 |
| LexA | 313-332 | 7.772 |
| Fur | 250-264 | 7.448 |
| TorR | 201-210 | 7.437 |
| UlaR | 246-265 | 7.427 |
| LacI | 146-166 | 7.381 |
| ArgR | 31-46 | 7.286 |
| Nac | 341-355 | 7.081 |
| CysB | 217-258 | 6.788 |
| PhoB | 289-308 | 6.683 |
| ArgP | 54-66 | 6.498 |
| AraC | 346-363 | 6.489 |
| NarL | 308-314 | 6.331 |
| Mlc | 357-379 | 6.311 |
| Lrp | 80-91 | 6.207 |
| FNR | 83-104 | 6.066 |
| PhoP | 324-340 | 6.049 |
| TyrR | 311-332 | 5.984 |
| MarA | 364-384 | 5.760 |
| GalS | 313-328 | 5.688 |
| GalR | 313-328 | 5.688 |
| XylR | 225-242 | 5.625 |
| CueR | 268-286 | 5.606 |
| GcvA | 19-47 | 5.592 |
| NorR | 98-114 | 5.324 |
| GlpR | 26-45 | 5.263 |