| TF name | Position | PWM scan score |
| ModE | 354-380 | 9.475 |
| DnaA | 342-350 | 8.482 |
| CueR | 170-188 | 7.959 |
| TorR | 144-153 | 7.571 |
| H-NS | 85-99 | 7.148 |
| MalT | 266-275 | 6.905 |
| NarP | 258-264 | 6.629 |
| SoxS | 81-98 | 6.583 |
| NarL | 253-259 | 6.169 |
| MetJ | 70-77 | 5.973 |
| Rob | 100-120 | 5.639 |
| IHF | 67-79 | 5.500 |
| Lrp | 177-188 | 5.368 |
| RhaS | 106-122 | 5.345 |
| GadE | 60-79 | 5.317 |
| Fis | 151-171 | 5.176 |
| FNR | 355-376 | 5.097 |
| ArgR | 346-361 | 5.087 |
| AraC | 221-238 | 5.015 |