| TF name | Position | PWM scan score |
| GadE | 359-378 | 21.623 |
| NagC | 258-280 | 19.106 |
| ArcA | 281-341 | 16.124 |
| CysB | 358-399 | 13.691 |
| DcuR | 264-318 | 11.747 |
| Rob | 357-377 | 11.241 |
| PhoP | 298-314 | 10.961 |
| AgaR | 271-294 | 10.606 |
| SoxS | 262-279 | 10.287 |
| Fur | 323-337 | 10.075 |
| OmpR | 371-390 | 9.744 |
| CRP | 320-341 | 9.662 |
| Fis | 376-396 | 9.404 |
| Mlc | 256-278 | 8.959 |
| ArgR | 271-286 | 8.798 |
| DnaA | 175-183 | 8.482 |
| H-NS | 362-376 | 8.239 |
| FNR | 323-344 | 8.169 |
| Nac | 319-333 | 8.151 |
| IdnR | 42-57 | 7.942 |
| MarA | 116-136 | 7.909 |
| Lrp | 172-183 | 7.854 |
| PspF | 351-367 | 7.769 |
| UlaR | 274-293 | 7.674 |
| FadR | 22-38 | 7.616 |
| GcvA | 269-297 | 7.519 |
| TorR | 281-290 | 7.487 |
| GlpR | 23-42 | 7.309 |
| NarL | 328-334 | 7.283 |
| IHF | 279-291 | 7.244 |
| RcsB | 352-365 | 7.205 |
| AraC | 6-23 | 6.887 |
| Ada | 261-288 | 6.403 |
| ArgP | 333-345 | 6.207 |
| MalT | 111-120 | 5.927 |
| NarP | 213-219 | 5.835 |
| LacI | 64-84 | 5.768 |
| FhlA | 250-289 | 5.136 |
| XylR | 348-365 | 5.131 |