| TF name | Position | PWM scan score |
| Ada | 336-363 | 13.414 |
| Fur | 173-187 | 13.140 |
| AgaR | 121-144 | 11.800 |
| Mlc | 124-146 | 10.585 |
| GlpR | 331-350 | 10.421 |
| H-NS | 219-233 | 9.740 |
| TorR | 133-142 | 9.683 |
| OmpR | 156-175 | 9.558 |
| ArgR | 165-180 | 9.366 |
| IdnR | 179-194 | 9.315 |
| Nac | 305-319 | 8.792 |
| PurR | 375-390 | 8.434 |
| IHF | 119-131 | 8.376 |
| RcsB | 351-364 | 8.274 |
| CpxR | 79-93 | 8.217 |
| ModE | 50-76 | 8.025 |
| GadE | 176-195 | 7.933 |
| NagC | 355-377 | 7.687 |
| Rob | 28-48 | 7.629 |
| NorR | 248-264 | 7.616 |
| Lrp | 176-187 | 7.464 |
| CueR | 71-89 | 7.330 |
| ArgP | 6-18 | 7.035 |
| PhoP | 166-182 | 6.896 |
| NarL | 175-181 | 6.881 |
| CysB | 341-382 | 6.540 |
| FruR | 116-133 | 6.495 |
| FadR | 283-299 | 6.355 |
| NarP | 44-50 | 6.076 |
| DeoR | 51-66 | 6.069 |
| CRP | 122-143 | 6.052 |
| MarA | 42-62 | 5.724 |
| MalT | 383-392 | 5.703 |
| UlaR | 122-141 | 5.680 |
| PhoB | 160-179 | 5.678 |
| Fis | 162-182 | 5.415 |
| ArcA | 145-205 | 5.212 |