| TF name | Position | PWM scan score |
| CueR | 272-290 | 11.751 |
| ArgR | 276-291 | 11.074 |
| MetJ | 376-383 | 10.810 |
| SoxS | 307-324 | 10.335 |
| GlpR | 287-306 | 9.721 |
| OmpR | 144-163 | 8.665 |
| NarL | 323-329 | 8.353 |
| IHF | 312-324 | 8.283 |
| AgaR | 70-93 | 7.079 |
| DnaA | 150-158 | 6.913 |
| Fis | 79-99 | 6.457 |
| PurR | 346-361 | 6.319 |
| ArgP | 150-162 | 6.116 |
| DeoR | 276-291 | 5.923 |
| GadE | 317-336 | 5.832 |
| CytR | 72-111 | 5.770 |
| RhaS | 55-71 | 5.769 |
| MarA | 267-287 | 5.738 |
| H-NS | 101-115 | 5.446 |
| RcsB | 145-158 | 5.422 |
| TorR | 147-156 | 5.309 |
| FadR | 76-92 | 5.261 |
| NtrC | 87-103 | 5.194 |
| GntR | 298-317 | 5.175 |
| Lrp | 72-83 | 5.171 |
| LacI | 106-126 | 5.169 |
| Nac | 143-157 | 5.159 |