| TF name | Position | PWM scan score |
| SoxS | 150-167 | 14.503 |
| MarA | 317-337 | 12.781 |
| IHF | 333-345 | 12.103 |
| GadE | 158-177 | 11.836 |
| OmpR | 316-335 | 11.392 |
| Nac | 155-169 | 10.788 |
| FNR | 317-338 | 10.256 |
| Fis | 156-176 | 10.081 |
| FhlA | 288-327 | 9.833 |
| RcsB | 103-116 | 9.335 |
| AgaR | 356-379 | 9.274 |
| Lrp | 212-223 | 9.095 |
| ArcA | 197-257 | 9.066 |
| PhoB | 211-230 | 8.647 |
| H-NS | 332-346 | 8.413 |
| TorR | 84-93 | 7.994 |
| Rob | 324-344 | 7.923 |
| CRP | 339-360 | 7.450 |
| ArgR | 135-150 | 6.932 |
| NarL | 141-147 | 6.744 |
| ArgP | 332-344 | 6.604 |
| GlpR | 316-335 | 6.520 |
| NarP | 64-70 | 6.488 |
| UxuR | 306-323 | 6.175 |
| Ada | 370-397 | 6.146 |
| MetR | 67-90 | 6.094 |
| XylR | 312-329 | 5.963 |
| MetJ | 345-352 | 5.904 |
| PhoP | 62-78 | 5.699 |
| LexA | 184-203 | 5.664 |
| CytR | 315-354 | 5.498 |
| FadR | 7-23 | 5.393 |
| MalT | 244-253 | 5.308 |
| GcvA | 330-358 | 5.023 |