| TF name | Position | PWM scan score |
| CRP | 170-191 | 12.910 |
| PspF | 36-52 | 10.210 |
| DeoR | 191-206 | 10.093 |
| GadE | 66-85 | 9.898 |
| H-NS | 232-246 | 9.833 |
| AraC | 127-144 | 9.134 |
| Lrp | 326-337 | 9.019 |
| GlpR | 298-317 | 8.906 |
| RhaS | 179-195 | 8.880 |
| TorR | 379-388 | 8.822 |
| NarL | 291-297 | 8.755 |
| Ada | 334-361 | 8.483 |
| ArgR | 382-397 | 8.212 |
| Nac | 63-77 | 8.145 |
| NarP | 286-292 | 8.118 |
| NorR | 172-188 | 8.084 |
| MetJ | 250-257 | 7.690 |
| ArgP | 66-78 | 7.666 |
| Fis | 377-397 | 7.298 |
| Mlc | 328-350 | 7.240 |
| MelR | 263-280 | 6.940 |
| DnaA | 41-49 | 6.896 |
| FNR | 137-158 | 6.848 |
| GntR | 227-246 | 6.763 |
| UxuR | 279-296 | 6.439 |
| UlaR | 122-141 | 6.354 |
| PhoP | 66-82 | 6.236 |
| RcsB | 326-339 | 6.223 |
| MalT | 49-58 | 6.073 |
| XylR | 264-281 | 5.948 |
| CytR | 295-334 | 5.640 |
| IHF | 318-330 | 5.610 |
| SoxS | 230-247 | 5.518 |
| CpxR | 298-312 | 5.505 |
| CysB | 58-99 | 5.406 |
| IdnR | 222-237 | 5.269 |
| OmpR | 380-399 | 5.192 |