| TF name | Position | PWM scan score |
| H-NS | 372-386 | 11.367 |
| OmpR | 359-378 | 9.610 |
| IHF | 9-21 | 9.383 |
| Rob | 207-227 | 9.337 |
| Lrp | 231-242 | 8.766 |
| CytR | 232-271 | 8.608 |
| RhaS | 163-179 | 8.383 |
| NarP | 307-313 | 8.308 |
| MalT | 259-268 | 8.295 |
| NarL | 47-53 | 8.190 |
| ArgP | 8-20 | 7.976 |
| Fis | 34-54 | 7.784 |
| PhoB | 371-390 | 7.617 |
| TorR | 300-309 | 7.492 |
| AraC | 349-366 | 7.373 |
| RcsB | 229-242 | 7.291 |
| GalR | 5-20 | 7.241 |
| GalS | 5-20 | 7.241 |
| PspF | 370-386 | 7.075 |
| Nac | 261-275 | 6.719 |
| CRP | 46-67 | 6.402 |
| FadR | 189-205 | 6.141 |
| Mlc | 28-50 | 5.884 |
| ModE | 9-35 | 5.853 |
| CpxR | 232-246 | 5.744 |
| DnaA | 176-184 | 5.740 |
| FNR | 9-30 | 5.636 |
| MarA | 142-162 | 5.633 |
| GntR | 1-20 | 5.554 |
| Ada | 99-126 | 5.451 |
| DeoR | 277-292 | 5.203 |
| ArcA | 219-279 | 5.187 |
| Fur | 45-59 | 5.186 |
| MetJ | 294-301 | 5.165 |
| XylR | 101-118 | 5.092 |