| TF name | Position | PWM scan score |
| PhoB | 147-166 | 12.420 |
| UlaR | 263-282 | 10.958 |
| DnaA | 32-40 | 10.474 |
| CpxR | 320-334 | 9.877 |
| MalT | 41-50 | 9.678 |
| GntR | 306-325 | 8.750 |
| NarP | 204-210 | 7.860 |
| TorR | 220-229 | 7.293 |
| AgaR | 195-218 | 7.083 |
| IdnR | 266-281 | 6.945 |
| NarL | 199-205 | 6.854 |
| Nac | 155-169 | 6.809 |
| Ada | 138-165 | 6.631 |
| MarA | 307-327 | 6.556 |
| Mlc | 199-221 | 6.464 |
| Fis | 363-383 | 6.386 |
| FNR | 271-292 | 6.382 |
| CRP | 374-395 | 6.337 |
| IHF | 224-236 | 6.294 |
| Lrp | 197-208 | 6.228 |
| NtrC | 356-372 | 6.199 |
| DeoR | 62-77 | 6.169 |
| ArcA | 191-251 | 6.001 |
| FruR | 213-230 | 5.962 |
| NorR | 150-166 | 5.801 |
| Rob | 24-44 | 5.589 |
| AraC | 325-342 | 5.345 |
| PhoP | 202-218 | 5.280 |
| H-NS | 215-229 | 5.220 |
| NagC | 272-294 | 5.116 |