| TF name | Position | PWM scan score |
| GlpR | 88-107 | 10.742 |
| NagC | 183-205 | 10.245 |
| Fis | 34-54 | 9.396 |
| IHF | 29-41 | 8.954 |
| FNR | 164-185 | 8.698 |
| MetJ | 374-381 | 8.617 |
| RcsB | 305-318 | 8.393 |
| DnaA | 296-304 | 8.284 |
| Nac | 3-17 | 8.250 |
| PhoP | 367-383 | 6.915 |
| ArgP | 297-309 | 6.812 |
| MarA | 149-169 | 6.793 |
| RhaS | 5-21 | 6.578 |
| NarL | 293-299 | 6.534 |
| FadR | 19-35 | 6.201 |
| CueR | 136-154 | 6.181 |
| PurR | 49-64 | 5.877 |
| GntR | 183-202 | 5.711 |
| AraC | 198-215 | 5.671 |
| TorR | 56-65 | 5.453 |
| H-NS | 292-306 | 5.379 |
| IdnR | 339-354 | 5.344 |
| Rob | 330-350 | 5.343 |
| MalT | 311-320 | 5.322 |
| NtrC | 377-393 | 5.307 |
| DeoR | 183-198 | 5.191 |