| TF name | Position | PWM scan score |
| Rob | 326-346 | 10.642 |
| H-NS | 345-359 | 10.260 |
| NagC | 88-110 | 10.245 |
| CpxR | 377-391 | 9.588 |
| FNR | 69-90 | 8.698 |
| MetJ | 279-286 | 8.617 |
| RcsB | 210-223 | 8.393 |
| SoxS | 314-331 | 8.317 |
| DnaA | 201-209 | 8.284 |
| Fis | 335-355 | 7.148 |
| Nac | 218-232 | 7.101 |
| Fur | 376-390 | 7.030 |
| PhoP | 272-288 | 6.915 |
| ArgP | 202-214 | 6.812 |
| MarA | 54-74 | 6.793 |
| IHF | 334-346 | 6.679 |
| NarL | 198-204 | 6.534 |
| CueR | 41-59 | 6.181 |
| GlpR | 218-237 | 5.910 |
| GntR | 88-107 | 5.711 |
| AraC | 103-120 | 5.671 |
| CRP | 362-383 | 5.534 |
| Lrp | 294-305 | 5.501 |
| RhaS | 258-274 | 5.473 |
| IdnR | 244-259 | 5.344 |
| MalT | 216-225 | 5.322 |
| NtrC | 282-298 | 5.307 |
| DeoR | 88-103 | 5.191 |
| UlaR | 360-379 | 5.154 |