| TF name | Position | PWM scan score |
| MarA | 325-345 | 9.875 |
| PurR | 150-165 | 8.421 |
| CueR | 237-255 | 7.877 |
| NarL | 332-338 | 7.577 |
| NarP | 148-154 | 7.426 |
| Fis | 323-343 | 7.377 |
| FadR | 281-297 | 6.839 |
| DnaA | 59-67 | 6.709 |
| MetJ | 75-82 | 6.600 |
| ArgP | 361-373 | 6.411 |
| CRP | 322-343 | 6.299 |
| GalR | 326-341 | 6.011 |
| GalS | 326-341 | 6.011 |
| H-NS | 332-346 | 5.878 |
| Nac | 354-368 | 5.501 |
| RcsB | 318-331 | 5.409 |
| MetR | 55-78 | 5.358 |
| DeoR | 240-255 | 5.331 |
| SoxS | 255-272 | 5.259 |
| PhoP | 109-125 | 5.144 |
| FNR | 155-176 | 5.120 |
| PhoB | 334-353 | 5.012 |